Development of an efficient glucosinolate extraction method

Background: Glucosinolates, anionic sulfur rich secondary metabolites, have been extensively studied because of their occurrence in the agriculturally important brassicaceae and their impact on human and animal health. There is also increasing interest in the biofumigant properties of toxic glucosinolate hydrolysis products as a method to control agricultural pests. Evaluating biofumigation potential requires rapid and accurate quantification of glucosinolates, but current commonly used methods of extraction prior to analysis involve a number of time consuming and hazardous steps; this study aimed to develop an improved method for glucosinolate extraction. Results: Three methods previously used to extract glucosinolates from brassicaceae tissues, namely extraction in cold methanol, extraction in boiling methanol, and extraction in boiling water were compared across tissue type (root, stem leaf ) and four brassicaceae species (B. juncea, S. alba, R. sativus, and E. sativa). Cold methanol extraction was shown to perform as well or better than all other tested methods for extraction of glucosinolates with the exception of glucoraphasatin in R. sativus shoots. It was also demonstrated that lyophilisation methods, routinely used during extraction to allow tissue disruption, can reduce final glucosinolate concentrations and that extracting from frozen wet tissue samples in cold 80% methanol is more effective. Conclusions: We present a simplified method for extracting glucosinolates from plant tissues which does not require the use of a freeze drier or boiling methanol, and is therefore less hazardous, and more time and cost effective. The presented method has been shown to have comparable or improved glucosinolate extraction efficiency relative to the commonly used ISO method for major glucosinolates in the Brassicaceae species studied: sinigrin and gluconasturtiin in B. juncea; sinalbin, glucotropaeolin, and gluconasturtiin in S. alba; glucoraphenin and glucoraphasatin in R. sativus; and glucosatavin, glucoerucin and glucoraphanin in E. sativa

Microbial metabolism directly affects trace gases in (sub) polar snowpacks

Concentrations of trace gases trapped in ice are considered to develop uniquely from direct snow/atmosphere interactions at the time of contact. This assumption relies upon limited or no biological, chemical or physical transformations occurring during transition from snow to firn to ice; a process that can take decades to complete. Here, we present the first evidence of environmental alteration due to in situ microbial metabolism of trace gases (methyl halides and dimethyl sulfide) in polar snow. We collected evidence for ongoing microbial metabolism from an Arctic and an Antarctic location during different years. Methyl iodide production in the snowpack decreased significantly after exposure to enhanced UV radiation. Our results also show large variations in the production and consumption of other methyl halides, including methyl bromide and methyl chloride, used in climate interpretations. These results suggest that this long-neglected microbial activity could constitute a potential source of error in climate history interpretations, by introducing a so far unappreciated source of bias in the quantification of atmospheric-derived trace gases trapped within the polar ice caps

The Sedimentary Carbon-Sulfur-Iron Interplay – A Lesson From East Anglian Salt Marsh Sediments

We explore the dynamics of the subsurface sulfur, iron and carbon cycles in salt marsh sediments from East Anglia, United Kingdom. We report measurements of pore fluid and sediment geochemistry, coupled with results from laboratory sediment incubation experiments, and develop a conceptual model to describe the influence of bioturbation on subsurface redox cycling. In the studied sediments the subsurface environment falls into two broadly defined geochemical patterns – iron-rich sediments or sulfide-rich sediments. Within each sediment type nearly identical pore fluid and solid phase geochemistry (in terms of concentrations of iron, sulfate, sulfide, dissolved inorganic carbon (DIC), and the sulfur and oxygen isotope compositions of sulfate) are observed in sediments that are hundreds of kilometers apart. Strictly iron-rich and strictly sulfide-rich sediments, despite their substantive geochemical differences, are observed within spatial distances of less than five meters. We suggest that this bistable system results from a series of feedback reactions that determine ultimately whether sediments will be sulfide-rich or iron-rich. We suggest that an oxidative cycle in the iron-rich sediment, driven by bioirrigation, allows rapid oxidation of organic matter, and that this irrigation impacts the sediment below the immediate physical depth of bioturbation. This oxidative cycle yields iron-rich sediments with low total organic carbon, dominated by microbial iron reduction and no methane production. In the absence of bioirrigation, sediments in the salt marsh become sulfide-rich with high methane concentrations. Our results suggest that the impact of bioirrigation not only drives recycling of sedimentary material but plays a key role in sedimentary interactions among iron, sulfur and carbon